PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039386m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 583aa    MW: 64510.3 Da    PI: 8.5666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039386mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15331416183
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+ +++
  orange1.1g039386m 331 FEKILSASDAGRIGRLVLPKACAEAYfpHISQSEGVPLRVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTSMIH 416
                        99**************************777778999***************9989999999***9.***************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-25327443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-16328412IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-20329442No hitNo description
SMARTSM010191.3E-14331431IPR003340B3 DNA binding domain
PfamPF023622.3E-12331418IPR003340B3 DNA binding domain
PROSITE profilePS508638.854331444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC  60
NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT  120
QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE  180
VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS  240
NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK  300
NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI  360
SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLRAG DTSMIHSILT  420
RDDKITFSRI DPGGKLVMGF RKAPIPGDMQ DAQTSAITNG CPGESFLSGV TENLPTVSGY  480
SGHFQMLKGS KDPHIDALSE HLSLAEGGNG WHKSENHGQK TNEDSPQKSL LGMEKKRTRN  540
IGSKSKRLLM HSEEAMELRL TWEEAQDLLR PSPSARTKHC HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-123304111396DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432020.10.0hypothetical protein CICLE_v10000225mg
RefseqXP_006491930.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
TrEMBLV4T1N20.0V4T1N2_9R
STRINGPOPTR_0019s15070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-163high-level expression of sugar-inducible gene 2